scloop

API

Reference for the public functions in scl.pp, scl.tl, scl.pl, and scl.io.

scl.pp

prepare_adata

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delve_fs

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scl.tl

find_loops

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analyze_loops

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match_loops

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scl.pl

loops

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persistence_diagram

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bar_lifetimes

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hist_lifetimes

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loop_embedding

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loop_rank

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loop_landscape

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loop_edge_embedding

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loop_edge_overlay

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match_loops_overlay

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plot_trajectory

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scl.io

save_scloop

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load_scloop

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load_scloop_adata

Content coming soon.